热度:

出图命令：

dot -Tpng exm.dot >exm.png

1.First example:

digraph G {
{node [color=lightblue, style=filled]; “Conservation”; “Binding specificity”; “Function in iPS”;}
{node [color=lightgrey, style=filled]; “Overexpression”; “Other work”}
{node [shape=diamond, color=lightgrey, style=filled]; “Phenotype changes”;}
“FoxP1″ -> “Identify isoforms”;
“Identify isoforms” -> “Make sure expression differences”;
“Make sure expression differences” -> “Conservation”
“Make sure expression differences” -> “Binding specificity” ;
“Make sure expression differences” -> “Knock down” ;
“Make sure expression differences” -> “Overexpression” ;
“Overexpression” -> “Phenotype changes”
“Knock down” -> “Phenotype changes”
“Phenotype changes” -> “Other work” [label=”N”];
“Phenotype changes” -> “RNA-Seq” [label=”Y”];
“Phenotype changes” -> “Chip-Seq” [label=”Y”];
“RNA-Seq” -> “Functional analysis” ;
“Chip-Seq” -> “Functional analysis” ;
“Functional analysis” -> “Function in ES”;
“Functional analysis” -> “Function in iPS”;
“Binding specificity” -> “Chip-Seq” [label=”Y”];
/* “Conservation” -> “Functional analysis”[label=”needed”];
“Conservation” -> “More important”;*/
FoxP1 [shape=Mdiamond];

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

2.Second example

digraph G {
subgraph cluster_0 {
style=filled;
color=lightgrey;
node [style=filled, color=white];
“Quality estimate”->”Mapping”->”Filter”->”Peak calling”->”Peak a nnotation”->”Differential analysis”->”…”;
label=”Flow”;
}

subgraph cluster_1 {
node [style=filled];
FastQC->Bwa->Samtools->Macs->Ceas->Scripts->”……”;
label = “Tools”;
color=blue;
}
Reads -> “Quality estimate”;
Reads -> “FastQC”;
Reads [shape=Mdiamond];
//Quality estimate — FastQC
}

}

 

3.Third example

4.Forth example