Online tools
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2-30 Venn Diagrams (non-proportional) http://bioinformatics.psb.ugent.be/webtools/Venn/
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2-6 Venn Diagrams (non-proportional) http://bioinfo.genotoul.fr/jvenn/example.html
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2-4 Venn (non-proportional) http://bioinfogp.cnb.csic.es/tools/venny/index.html
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2-3 Venn (non-proportional) http://genevenn.sourceforge.net/
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3-way Venn (proportional) http://www.cmbi.ru.nl/cdd/biovenn/index.php
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3-way Venn (proportional) http://www.pangloss.com/seidel/Protocols/venn.cgi
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4-way Venn (proportional) http://www.pangloss.com/seidel/Protocols/venn4.cgi
Local tools
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2-8 Venn Diagrams (proportional, nested, powerful) https://github.com/linguoliang/VennPainter
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2-6 Venn Diagrams (proportional) http://sysbio.uni-ulm.de/?Software:VennMaster
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3-way Venn diagram (proportional) http://omics.pnl.gov/software/venn-diagram-plotter
R packages
- VennDiagram (non-proportional) One easy way of using VennDiagram https://github.com/Tong-Chen/s-plot
- venneuler (proportional, may not always right)
Other intersection solutions
- UpSetR: http://www.caleydo.org/tools/upset/
- Bubble PLot: http://bl.ocks.org/mbostock/4063269
- ChordDiagram: http://bl.ocks.org/mbostock/4062006