Tips for KEGG usage
Get full list of KEGG pathways and orthologs
http://www.genome.jp/kegg-bin/download_htext?htext=br08901.keg&format=htext&filedir=
http://www.genome.jp/kegg-bin/download_htext?htext=ko00001.keg&format=htext&filedir=
Get the orthologs of one pathway
http://togows.org/entry/kegg-pathway/ko00010/orthologs.json
will return
[
{
"K00844": "hexokinase [EC:2.7.1.1]",
"K12407": "glucokinase [EC:2.7.1.2]",
"K00845": "glucokinase [EC:2.7.1.2]",
"K01810": "glucose-6-phosphate isomerase [EC:5.3.1.9]",
"K00001": "alcohol dehydrogenase [EC:1.1.1.1]",
.
.
.
}
]
Get the genes of one ortholog
http://togows.org/entry/kegg-orthology/K00001/genes.json
will return
[
{
"dme": [
"Dmel_CG3481"
],
"dpo": [
"Dpse_GA17214"
],
"dan": [
"Dana_GF14888"
],
"der": [
"Dere_GG25120"
]
.
.
.
}
]
Get the amino sequence of one gene
http://togows.org/entry/kegg-genes/dme:Dmel_CG3481,dpo:Dpse_GA17214/aafasta.json
will return
[
">Dmel_CG3481 (RefSeq) Alcohol dehydrogenase (EC:1.1.1.1
1.2.1.10)\nMSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVTFYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAILDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDLGTLEAIQWTKHWDSGI"
,
">Dpse_GA17214 (RefSeq) GA17214 gene product from transcript GA17214-RA
(EC:1.1.1.1)\nMSLTNKNVVFVAGLGGIGLDTSRELVKRNLKNLVILDRIDNPAAIAELKAINPKVTITFYPYDVTVPVAETTKLLKTIFAQVKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAILDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGSKAAVVNFTSSLAKLAPITGVTAYTVNPGITKTTLVHKFNSWLDVEPRVAEKLLEHPTQTSQQCAENFVKAIELNKNGAIWKLDLGTLEPITWTQHWDSGI"
]
Get the compounds of one pathway
http://togows.org/entry/kegg-pathway/ko00010/compounds.json
will return
[
{
"C00022": "Pyruvate",
"C00024": "Acetyl-CoA",
"C00031": "D-Glucose",
"C00033": "Acetate",
"C00036": "Oxaloacetate",
}
]
Get the names of one compound
http://togows.org/entry/kegg-compound/C00003/names.json
will return
[
[
" NAD+" ,
" NAD" ,
" Nicotinamide adenine dinucleotide" ,
" DPN" ,
" Diphosphopyridine nucleotide" ,
" Nadide" ,
" beta-NAD+"
]
]
