Record of circos usage

Install circos

  • Download circos from http://circos.ca/software/download/circos/ and run following command:
    tar xvzf circos-0.67.tgz
    ln -s `pwd`/circos-0.67/bin ~/bin #make sure ~/bin is in $PATH
    
  • Install required perl modules * Check required perl modules by running circos -module. * Configure CPANM by typing following commands in terminal
          wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib
          eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib`
          echo 'eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib`' >> ~/.bash_profile
          echo 'export MANPATH=$HOME/perl5/man:$MANPATH' >> ~/.bash_profile
    
      * Install needed modules by typing `cpanm YAML Clone Config::General Font::TTF::Font GD GD::Polyline List::MoreUtils Math::Bezier Math::Round Math::VecStat Params::Validate Readonly Regexp::Common SVG Set::IntSpan Statistics::Basic Text::Format` in `terminal`.
      * Install `libgd` from http://libgd.bitbucket.org if `GD` can not be installed. Make sure `gdlib-config` is $PATH.
    
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积微,月不胜日,时不胜月,岁不胜时。凡人好敖慢小事,大事至,然后兴之务之。如是,则常不胜夫敦比于小事者矣!何也?小事之至也数,其悬日也博,其为积也大。大事之至也希,其悬日也浅,其为积也小。故善日者王,善时者霸,补漏者危,大荒者亡!故,王者敬日,霸者敬时,仅存之国危而后戚之。亡国至亡而后知亡,至死而后知死,亡国之祸败,不可胜悔也。霸者之善著也,可以时托也。王者之功名,不可胜日志也。财物货宝以大为重,政教功名者反是,能积微者速成。诗曰:德如毛,民鲜能克举之。此之谓也。

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